Papers, reviews, tutorials


  1. Genome Research
    Data structures based on k-mers for querying large collections of sequencing data sets
    Camille Marchet, Christina Boucher, Simon J. Puglisi, Paul Medvedev, Mikaël Salson, and Rayan Chikhi
    Genome Research, Jan 2021
  2. ACM Comput. Surv.
    Data Structures to Represent a Set of K-Long DNA Sequences
    Rayan Chikhi, Jan Holub, and Paul Medvedev
    ACM Comput. Surv., Mar 2021
  3. Genome Biology
    Technology dictates algorithms: recent developments in read alignment
    Mohammed Alser, Jeremy Rotman, Dhrithi Deshpande, Kodi Taraszka, Huwenbo Shi, Pelin Icer Baykal, Harry Taegyun Yang, Victor Xue, Sergey Knyazev, Benjamin D. Singer, Brunilda Balliu, David Koslicki, Pavel Skums, Alex Zelikovsky, Can AlkanOnur Mutlu, and Serghei Mangul
    Genome Biology, Aug 2021